EMBL E-STAR Publications

Genome-wide Analysis Reveals MOF as a Key Regulator of Dosage Compensation and Gene Expression in Drosophila

Jop Kind, Juan M. Vaquerizas, Philipp Gebhardt, Marc Gentzel, Nicholas M. Luscombe, Paul Bertone, and Asifa Akhtar

Cell, Vol 133, 813-828, 30 May 2008

Text processing through Web services: calling Whatizit.

Rebholz-Schuhmann, D.; Arregui, M.; Gaudan, S.; Kirsch, H. & Jimeno, A.

Bioinformatics (Oxford, England)

Vol. 24

pp. 296-298

2008

Combining Evidence, Specificity and Proximity towards the Normalization of Gene Ontology Terms in Text.

S. Gaudan, A. Jimeno Yepes, V. Lee, and D. Rebholz-Schuhmann.

EURASIP Journal on Bioinformatics and Systems Biology Vol. 2008 (2008), Article ID 342746 9 pages doi:10.1155/2008/342746

The chromatin-remodeling factor FACT contributes to centromeric heterochromatin independently of RNAi.

Lejeune, E.; Bortfeld, M.; White, S. A.; Pidoux, A. L.; Ekwall, K.; Allshire, R. C. & Ladurner, A. G.

Current biology

Vol. 17

pp. 1219-1224

2007

Pcl-PRC2 is needed to generate high levels of H3-K27 trimethylation at Polycomb target genes.

Nekrasov, M.; Klymenko, T.; Fraterman, S.; Papp, B.; Oktaba, K.; Köcher, T.; Cohen, A.; Stunnenberg, H. G.; Wilm, M. & Müller, Jü.

The EMBO journal

Vol. 26

pp. 4078-4088

2007

Profilin2 contributes to synaptic vesicle exocytosis, neuronal excitability, and novelty-seeking behavior.

Pilo Boyl, P.; Di Nardo, A.; Mulle, C.; Sassoè-Pognetto, M.; Panzanelli, P.; Mele, A.; Kneussel, M.; Costantini, V.; Perlas, E.; Massimi, M.; Vara, H.; Giustetto, M. & Witke, W.

The EMBO journal

Vol. 26

pp. 2991-3002

2007

A conserved motif in Argonaute-interacting proteins mediates functional interactions through the Argonaute PIWI domain.

Till, S.; Lejeune, E.; Thermann, R.; Bortfeld, M.; Hothorn, M.; Enderle, D.; Heinrich, C.; Hentze, M. & Ladurner, A.

Nature structural & molecular biology

Vol. 14

pp. 897-903

2007

Quantitative assessment of protein function prediction from metagenomics shotgun sequences.

Harrington, E.D.; Singh, A.H.; Doerks, T.; Letunic, I; von Mering, C; Jensen, LJ; Raes, J & Bork, P.

Proc Natl Acad Sci U S A

Vol. 104

pp 13913-13918

2007

Protein function space: viewing the limits or limited by our view?

Raes, J.; Harrington, E.D.; Singh, A.H. & Bork, P.

Curr Opin Struct Biol

Vol. 17

pp 362-369

2007

Cortical microtubule contacts position the spindle in C. elegans embryos.

Kozlowski, C.; Srayko, M. & Nedelec, F.

Cell

Vol. 129

pp. 499-510

2007

The three-dimensional structure of N-succinyldiaminopimelate aminotransferase from Mycobacterium tuberculosis.

Weyand, S.; Kefala, G. & Weiss, M.

Journal of Molecular Biology

Vol. 367

pp. 825-38

2007

Organization of interphase microtubules in fission yeast analyzed by electron tomography.

Höög, J.; Schwartz, C.; Noon, A.; O'Toole, E.; Mastronarde, D.; McIntosh, J. & Antony, C.

Developmental Cell

Vol. 12

pp. 349-61

2007

Whole-cell investigation of microtubule cytoskeleton architecture by electron tomography.

Höög, J. L. & Antony, C.

Methods in Cell Biology

Vol. 79

pp. 145-67

2007

Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate.

Santos, S.; Verveer, P. & Bastiaens, P.

Nature Cell Biology

Vol. 9

pp. 324-30

2007

Structural and mutational analysis of human Ad37 and canine adenovirus 2 fiber heads in complex with the D1 domain of coxsackie and adenovirus receptor.

Seiradake, E.; Lortat-Jacob, H.; Billet, O.; Kremer, E. & Cusack, S.

The Journal of Biological Chemistry

Vol. 281

pp. 33704-16

2006

Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes.

Suyama, M.; Harrington, E.; Bork, P. & Torrents, D.

PLoS Computational Biology

Vol. 2

pp. 76

2006

Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of DapC (Rv0858c) from Mycobacterium tuberculosis.

Weyand, S.; Kefala, G. & Weiss, M.

Acta crystallographica. Structural biology and crystallization communications

Vol. 62

pp. 794-7

2006

Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila.

Mendjan, S.; Taipale, M.; Kind, J.; Holz, H.; Gebhardt, P.; Schelder, M.; Vermeulen, M.; Buscaino, A.; Duncan, K.; Mueller, J.; Wilm, M.; Stunnenberg, H.; Saumweber, H. & Akhtar, A.

Molecular Cell

Vol. 21

pp. 811-23

2006

Protein annotation by EBIMed.

Rebholz-Schuhmann, D.; Kirsch, H.; Arregui, M.; Gaudan, S.; Rynbeek, M. & Stoehr, P.

Nature Biotechnology

Vol. 24

pp. 902-3

2006

Distributed modules for text annotation and IE applied to the biomedical domain.

Kirsch, H.; Gaudan, S. & Rebholz-Schuhmann, D.

International Journal of Medical Informatics

Vol. 75

pp. 496-500

2006

Hitting transcription in all the right places.

Lejeune, E. & Ladurner, A.

Nature Structural & Molecular Biology

Vol. 12

pp. 390-2

2005

Protein complexes: structure prediction challenges for the 21st century.

Aloy, P.; Pichaud, M. & Russell, R.

Current Opinion in Structural Biology

Vol. 15

pp. 15-22

2005

Resolving abbreviations to their senses in Medline.

Gaudan, S.; Kirsch, H. & Rebholz-Schuhmann, D.

Bioinformatics (Oxford, England)

Vol. 21

pp. 3658-64

2005

Crystal structure of enteric adenovirus serotype 41 short fiber head.

Seiradake, E. & Cusack, S.

Journal of Virology

Vol. 79

pp. 14088-94

2005

Protein coding potential of retroviruses and other transposable elements in vertebrate genomes.

Zdobnov, E.; Campillos, M.; Harrington, E.; Torrents, D. & Bork, P.

Nucleic Acids Research

Vol. 33

pp. 946-54

2005

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